Transcript: lnc-SLC5A9-3:1

Basic information

LNCipedia transcript ID: lnc-SLC5A9-3:1 
LNCipedia gene ID: lnc-SLC5A9-3
Location (hg38): chr1:49048316-49187585
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 713 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000456002.1; RP11-141A19.1-001; OTTHUMT00000022328.1; NONHSAT003141
Alternative gene names: ENSG00000229846.1; RP11-141A19.1; OTTHUMG00000008154.1; AC092264.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.9473 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC5A9-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC5A9-3:1
4.0 lnc-SLC5A9-3:1
4.1 lnc-SLC5A9-3:1
5.0 lnc-SLC5A9-3:1
5.1 lnc-CMPK1-20:2
5.2 lnc-SLC5A9-3:1