Transcript: lnc-SLC5A9-3:2

Basic information

LNCipedia transcript ID: lnc-SLC5A9-3:2 
LNCipedia gene ID: lnc-SLC5A9-3
Ensembl Gene ID: ENSG00000229846
Ensembl Transcript ID: ENST00000456002
Location (hg38): chr1:49025595-49187585
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 793 bp
Exons: 4
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456002.2
Alternative gene names: ENSG00000229846.2; AC099788.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.9473 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC5A9-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CMPK1-20:1
5.1 lnc-CMPK1-20:1
5.2 lnc-SLC5A9-3:2