Transcript: lnc-SLC6A12-2:9

Basic information

LNCipedia transcript ID: lnc-SLC6A12-2:9 
LNCipedia gene ID: lnc-SLC6A12-2
Ensembl Gene ID: ENSG00000256540
Ensembl Transcript ID: ENST00000537961
Location (hg38): chr12:167002-182399
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1038 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000537961; ENST00000537961.1; RP11-598F7.6-002; OTTHUMT00000397391.1; NONHSAT025306
Alternative gene names: ENSG00000256540; RP11-598F7.6; ENSG00000256540.1; OTTHUMG00000167979.1; AC007406.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.4943 non-coding 
CPAT coding probability 6.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A12-2:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC6A12-1:1
3.1 lnc-SLC6A12-1:1
4.0 lnc-SLC6A12-11:1
4.1 lnc-SLC6A12-2:9
5.0 lnc-SLC6A12-2:9
5.1 lnc-CHD4-127:7
5.2 lnc-SLC6A12-2:9