Transcript: lnc-SLC6A12-3:3

Basic information

LNCipedia transcript ID: lnc-SLC6A12-3:3 
LNCipedia gene ID: lnc-SLC6A12-3
Ensembl Gene ID: ENSG00000249695
Ensembl Transcript ID: ENST00000508953
Location (hg38): chr12:139534-149115
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4913 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508953.2; RP11-598F7.4-002; OTTHUMT00000397388.1; NONHSAT025301
Alternative gene names: ENSG00000249695.2; RP11-598F7.4; OTTHUMG00000167977.1; ENSG00000249695.6; AC026369.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 149.3251 coding 
CPAT coding probability 20.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC6A12-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A12-3:3
4.0 lnc-SLC6A12-3:3
4.1 lnc-SLC6A12-3:3
5.0 lnc-SLC6A12-3:3
5.1 lnc-CHD4-128:5
5.2 lnc-SLC6A12-3:3