Transcript: lnc-SLC6A12-3:4

Basic information

LNCipedia transcript ID: lnc-SLC6A12-3:4 
LNCipedia gene ID: lnc-SLC6A12-3
Location (hg38): chr12:140633-149115
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4485 bp
Exons: 5
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000508953
Alternative gene names: ENSG00000249695


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 149.3251 coding 
CPAT coding probability 21.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC6A12-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC6A12-2:2
3.1 lnc-SLC6A12-3:4
4.0 lnc-SLC6A12-3:4
4.1 lnc-SLC6A12-3:4
5.0 lnc-SLC6A12-3:4
5.1 lnc-CHD4-128:4
5.2 lnc-SLC6A12-3:4