Transcript: lnc-SLC6A15-1:1

Basic information

LNCipedia transcript ID: lnc-SLC6A15-1:1 
LNCipedia gene ID: lnc-SLC6A15-1
Location (hg38): chr12:83661084-83661719
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000547795; ENST00000547795.1; RP11-384P14.1-001; OTTHUMT00000405668.1
Alternative gene names: ENSG00000257124; RP11-384P14.1; ENSG00000257124.1; OTTHUMG00000169738.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -338.0592 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A15-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC6A15-1:1
3.1 lnc-SLC6A15-1:1
4.0 lnc-SLC6A15-1:1
4.1 lnc-SLC6A15-1:1
5.0 lnc-SLC6A15-1:1
5.1 lnc-SLC6A15-1:1
5.2 lnc-SLC6A15-1:1