Transcript: lnc-SLC6A15-1:2

Basic information

LNCipedia transcript ID: lnc-SLC6A15-1:2 
LNCipedia gene ID: lnc-SLC6A15-1
Ensembl Gene ID: ENSG00000257124
Ensembl Transcript ID: ENST00000547795
Location (hg38): chr12:83661009-83661719
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT029734; ENST00000547795.2
Alternative gene names: ENSG00000257124.2; RP11-384P14.1; AC093025.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -338.0592 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A15-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A15-1:2
4.0 lnc-SLC6A15-1:2
4.1 lnc-SLC6A15-1:2
5.0 lnc-SLC6A15-1:2
5.1 lnc-SLC6A15-1:2
5.2 lnc-SLC6A15-1:2