Transcript: lnc-SLC6A9-6:2

Basic information

LNCipedia transcript ID: lnc-SLC6A9-6:2 
LNCipedia gene ID: lnc-SLC6A9-6
Location (hg38): chr1:43973363-43974814
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 478 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000056966.1|MICT00000009612.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -234.0444 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A9-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC6A9-6:2
5.0 lnc-SLC6A9-6:2
5.1 lnc-C1orf210-10:1
5.2 lnc-SLC6A9-6:2