Transcript: lnc-SLC7A4-3:1

Basic information

LNCipedia transcript ID: lnc-SLC7A4-3:1 
LNCipedia gene ID: lnc-SLC7A4-3
Ensembl Gene ID: ENSG00000197210
Ensembl Transcript ID: ENST00000420508
Location (hg38): chr22:21114607-21124451
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4833 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420508.1; KB-1592A4.15-001; OTTHUMT00000320579.1; NONHSAT083632
Alternative gene names: ENSG00000197210.6; KB-1592A4.15; OTTHUMG00000150927.1; ENSG00000197210.7; AP000550.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 57.9839 non-coding 
CPAT coding probability 34.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC7A4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POM121L7-1:1
4.0 lnc-POM121L7-1:1
4.1 lnc-POM121L7-1:1
5.0 lnc-POM121L7-1:1
5.1 lnc-SCARF2-22:1
5.2 lnc-SLC7A4-3:1