Transcript: lnc-SLC7A4-3:3

Basic information

LNCipedia transcript ID: lnc-SLC7A4-3:3 
LNCipedia gene ID: lnc-SLC7A4-3
Location (hg38): chr22:21115822-21119462
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1563 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457627.2; KB-1592A4.15-201; NONHSAT083633
Alternative gene names: ENSG00000197210.6; KB-1592A4.15; OTTHUMG00000150927.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 62.5216 coding 
CPAT coding probability 96.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC7A4-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POM121L7-1:2
4.0 lnc-POM121L7-1:2
4.1 lnc-POM121L7-1:2
5.0 lnc-POM121L7-1:2
5.1 lnc-SCARF2-22:3
5.2 lnc-SLC7A4-3:3