Transcript: lnc-SLC7A5-3:1

Basic information

LNCipedia transcript ID: lnc-SLC7A5-3:1 
LNCipedia gene ID: lnc-SLC7A5-3
Location (hg38): chr16:87739763-87747706
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 346 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000563036.1; RP11-278A23.2-001; OTTHUMT00000431868.1; NONHSAT144320
Alternative gene names: ENSG00000260671.1; RP11-278A23.2; OTTHUMG00000176381.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.7745 non-coding 
CPAT coding probability 32.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC7A5-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC010536.1-1:1
4.0 lnc-AC010536.1-1:1
4.1 lnc-AC010536.1-1:1
5.0 lnc-AC010536.1-1:1
5.1 lnc-ZCCHC14-1:4
5.2 lnc-SLC7A5-3:1