Transcript: lnc-SLC7A5-3:2

Basic information

LNCipedia transcript ID: lnc-SLC7A5-3:2 
LNCipedia gene ID: lnc-SLC7A5-3
Ensembl Gene ID: ENSG00000260671
Ensembl Transcript ID: ENST00000563036
Location (hg38): chr16:87739771-87747706
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 338 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563036.2
Alternative gene names: ENSG00000260671.2; RP11-278A23.2; AC010536.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.7745 non-coding 
CPAT coding probability 32.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC7A5-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC010536.1-1:2
4.1 lnc-AC010536.1-1:2
5.0 lnc-AC010536.1-1:2
5.1 lnc-ZCCHC14-1:5
5.2 lnc-SLC7A5-3:2