Transcript: lnc-SLC9A1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC9A1-1:1 
LNCipedia gene ID: lnc-SLC9A1-1
Location (hg38): chr1:27230179-27234483
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 336 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002324
Alternative gene names: XLOC_000754; linc-SLC9A1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.9317 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC9A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC9A1-1:1
3.1 lnc-SLC9A1-1:1
4.0 lnc-SLC9A1-1:1
4.1 lnc-SLC9A1-1:1
5.0 lnc-SLC9A1-1:1
5.1 lnc-MAP3K6-3:1
5.2 lnc-SLC9A1-1:1