Transcript: lnc-SLC9A1-1:2

Basic information

LNCipedia transcript ID: lnc-SLC9A1-1:2 
LNCipedia gene ID: lnc-SLC9A1-1
Ensembl Gene ID: ENSG00000224311
Ensembl Transcript ID: ENST00000425205
Location (hg38): chr1:27229106-27234352
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 379 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000491; ENST00000425205.1; RP11-40H20.4-001; OTTHUMT00000012820.2; NONHSAT001872
Alternative gene names: XLOC_000754; linc-SLC9A1-1; ENSG00000224311.1; RP11-40H20.4; OTTHUMG00000004413.2; AL590640.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC9A1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC9A1-1:2
3.1 lnc-SLC9A1-1:2
4.0 lnc-SLC9A1-1:2
4.1 lnc-SLC9A1-1:2
5.0 lnc-SLC9A1-1:2
5.1 lnc-MAP3K6-3:3
5.2 lnc-SLC9A1-1:2