Transcript: lnc-SLC9A2-2:1

Basic information

LNCipedia transcript ID: lnc-SLC9A2-2:1 
LNCipedia gene ID: lnc-SLC9A2-2
Location (hg38): chr2:103011779-103019898
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 478 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00002957; ENST00000453878; ENST00000453878.1; AC108051.3-001; OTTHUMT00000329516.1; NONHSAT072872
Alternative gene names: XLOC_001599; linc-POU3F3-8; ENSG00000224850; AC108051.3; ENSG00000224850.1; OTTHUMG00000153099.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2571 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC9A2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM182-2:1
3.1 lnc-TMEM182-2:1
4.0 lnc-TMEM182-2:1
4.1 lnc-TMEM182-2:1
5.0 lnc-TMEM182-2:1
5.1 lnc-SLC9A4-15:1
5.2 lnc-SLC9A2-2:1