Transcript: lnc-SLC9A3-1:7

Basic information

LNCipedia transcript ID: lnc-SLC9A3-1:7 
LNCipedia gene ID: lnc-SLC9A3-1
Ensembl Gene ID: ENSG00000188242
Ensembl Transcript ID: ENST00000502511
Location (hg38): chr5:472107-472743
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 552 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT099882; ENST00000502511.1
Alternative gene names: ENSG00000188242.4; PP7080; AC010442.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 10.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC9A3-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2228K2.5.1-1:4
4.0 lnc-CTD-2228K2.5.1-1:4
4.1 lnc-CTD-2228K2.5.1-1:4
5.0 lnc-CTD-2228K2.5.1-1:4
5.1 lnc-IRX2-48:6
5.2 lnc-SLC9A3-1:7