Transcript: lnc-SLC9A4-1:1

Basic information

LNCipedia transcript ID: lnc-SLC9A4-1:1 
LNCipedia gene ID: lnc-SLC9A4-1
Ensembl Gene ID: ENSG00000234389
Ensembl Transcript ID: ENST00000450893
Location (hg38): chr2:102438713-102440475
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1327 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450893.1; AC007278.3-001; OTTHUMT00000329494.1; NONHSAT072862
Alternative gene names: ENSG00000234389.1; AC007278.3; OTTHUMG00000153092.1; AC007278.1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.9915 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC9A4-1:1 no no no no

Available literature

  1. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC9A4-1:1
4.0 lnc-SLC9A4-1:1
4.1 lnc-SLC9A4-1:1
5.0 lnc-SLC9A4-1:1
5.1 lnc-SLC9A4-1:1
5.2 lnc-SLC9A4-1:1