Transcript: lnc-SLCO4A1-8:1

Basic information

LNCipedia transcript ID: lnc-SLCO4A1-8:1 
LNCipedia gene ID: lnc-SLCO4A1-8
Ensembl Gene ID: ENSG00000174407
Ensembl Transcript ID: ENST00000624914
Location (hg38): chr20:62550453-62570764
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1220 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624914.3
Alternative gene names: ENSG00000174407.11; MIR1-1HG; ENSG00000174407.12; ENSG00000174407.13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.9744 non-coding 
CPAT coding probability 22.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLCO4A1-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C20orf166-5:2
4.1 lnc-C20orf166-5:2
5.0 lnc-C20orf166-5:2
5.1 lnc-GNAS-42:1
5.2 lnc-SLCO4A1-8:1