Transcript: lnc-SLITRK5-1:2

Basic information

LNCipedia transcript ID: lnc-SLITRK5-1:2 
LNCipedia gene ID: lnc-SLITRK5-1
Location (hg38): chr13:87683511-87697210
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 9590 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021867; NONHSAT034596
Alternative gene names: XLOC_010463; linc-GPC5-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.4792 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK5-1:2
3.1 lnc-SLITRK5-1:2
4.0 lnc-SLITRK5-1:2
4.1 lnc-SLITRK5-1:2
5.0 lnc-SLITRK5-1:2
5.1 lnc-COL4A2-169:2
5.2 lnc-SLITRK5-1:2