Transcript: lnc-SLITRK5-35:2

Basic information

LNCipedia transcript ID: lnc-SLITRK5-35:2 
LNCipedia gene ID: lnc-SLITRK5-35
RefSeq ID: NR_047021
Location (hg38): chr13:88540829-88545509
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 853 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034615; NR_047021; NR_047021.1
Alternative gene names: ; LINC00433


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1162 non-coding 
CPAT coding probability 6.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK5-35:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLITRK5-7:4
4.0 LINC00433:2
4.1 LINC00433:2
5.0 LINC00433:2
5.1 lnc-COL4A2-163:2
5.2 lnc-SLITRK5-35:2