Transcript: lnc-SLITRK5-35:4

Basic information

LNCipedia transcript ID: lnc-SLITRK5-35:4 
HGNC Gene Symbol: lnc-SLITRK5-35    
HGNC Full Gene Name: long intergenic non-protein coding RNA 433
Ensembl Gene ID: ENSG00000229443
Ensembl Transcript ID: ENST00000448425
Location (hg38): chr13:88542285-88545509
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 307 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021584; ENST00000448425; ENST00000448425.1; LINC00433-002; OTTHUMT00000045421.1; NONHSAT034617
Alternative gene names: XLOC_010466; linc-GPC5-5; ENSG00000229443; RP11-360A9.1; ENSG00000229443.1; LINC00433; OTTHUMG00000017171.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.9765 non-coding 
CPAT coding probability 3.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK5-35:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK5-7:2
3.1 lnc-SLITRK5-7:2
4.0 LINC00433:4
4.1 LINC00433:4
5.0 LINC00433:4
5.1 lnc-COL4A2-163:4
5.2 lnc-SLITRK5-35:4