Transcript: lnc-SLX1B-3:11

Basic information

LNCipedia transcript ID: lnc-SLX1B-3:11 
LNCipedia gene ID: lnc-SLX1B-3
Location (hg38): chr16:29116127-29217860
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000562902.1; RP11-426C22.5-001; OTTHUMT00000433246.1
Alternative gene names: ENSG00000260517.1; RP11-426C22.5; OTTHUMG00000176111.2; ENSG00000260517.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 171.4471 coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLX1B-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX29P2-2:1
4.0 lnc-SNX29P2-1:8
4.1 lnc-SNX29P2-1:8
5.0 lnc-SNX29P2-1:8
5.1 lnc-QPRT-14:7
5.2 lnc-SLX1B-3:11