Transcript: lnc-SLX1B-3:12

Basic information

LNCipedia transcript ID: lnc-SLX1B-3:12 
LNCipedia gene ID: lnc-SLX1B-3
Ensembl Gene ID: ENSG00000284685
Ensembl Transcript ID: ENST00000641956
Location (hg38): chr16:29139379-29331304
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1442 bp
Exons: 8
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641956.1
Alternative gene names: ENSG00000284685.1; AC009093.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.3658 non-coding 
CPAT coding probability 99.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLX1B-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-QPRT-14:8
5.1 lnc-QPRT-14:8
5.2 lnc-SLX1B-3:12