Transcript: lnc-SLX1B-3:15

Basic information

LNCipedia transcript ID: lnc-SLX1B-3:15 
LNCipedia gene ID: lnc-SLX1B-3
Location (hg38): chr16:29139661-29216706
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260517.1|ENST00000563477.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -38.952 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLX1B-3:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SNX29P2-1:9
5.0 lnc-SNX29P2-1:9
5.1 lnc-QPRT-14:11
5.2 lnc-SLX1B-3:15