Transcript: lnc-SLX1B-3:19

Basic information

LNCipedia transcript ID: lnc-SLX1B-3:19 
LNCipedia gene ID: lnc-SLX1B-3
Ensembl Gene ID: ENSG00000260517
Ensembl Transcript ID: ENST00000620513
Location (hg38): chr16:29212059-29214137
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2079 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT141589; ENST00000620513.1
Alternative gene names: ENSG00000260517.2; RP11-426C22.5; ENSG00000260517.3; AC009093.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.892 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLX1B-3:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX29P2-1:6
4.0 lnc-SNX29P2-1:6
4.1 lnc-SNX29P2-1:6
5.0 lnc-SNX29P2-1:6
5.1 lnc-QPRT-14:15
5.2 lnc-SLX1B-3:19