Transcript: lnc-SMAD3-1:1

Basic information

LNCipedia transcript ID: lnc-SMAD3-1:1 
LNCipedia gene ID: lnc-SMAD3-1
Location (hg38): chr15:67040574-67048245
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1784 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000502544; TCONS_00023265; NONHSAT046837
Alternative gene names: ENSG00000251428; XLOC_011292; linc-SMAD3; AC087482.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4919 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMAD3-1:1 no no no no

Available literature

  1. Merry (2015), DNMT1-associated long non-coding RNAs regulate global gene expression and DNA methylation in colon cancer., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMAD3-1:1
3.1 lnc-SMAD3-1:1
4.0 lnc-SMAD3-1:1
4.1 lnc-SMAD3-1:1
5.0 lnc-SMAD3-1:1
5.1 lnc-SMAD6-1:3
5.2 lnc-SMAD3-1:1