Transcript: lnc-SMARCA5-4:1

Basic information

LNCipedia transcript ID: lnc-SMARCA5-4:1 
LNCipedia gene ID: lnc-SMARCA5-4
Ensembl Gene ID: ENSG00000251600
Ensembl Transcript ID: ENST00000509369
Location (hg38): chr4:143559472-143568160
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 748 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT098565; ENST00000509369.1
Alternative gene names: ENSG00000251600.6; AC139713.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.3585 non-coding 
CPAT coding probability 62.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMARCA5-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMARCA5-4:1
4.0 lnc-SMARCA5-4:1
4.1 lnc-SMARCA5-4:1
5.0 lnc-SMARCA5-4:1
5.1 lnc-SMAD1-14:2
5.2 lnc-SMARCA5-4:1