Transcript: lnc-SMARCA5-4:13

Basic information

LNCipedia transcript ID: lnc-SMARCA5-4:13 
LNCipedia gene ID: lnc-SMARCA5-4
Ensembl Gene ID: ENSG00000251600
Ensembl Transcript ID: ENST00000510536
Location (hg38): chr4:143937867-143981916
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 410 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510536; ENST00000510536.1; RP11-673E1.1-003; OTTHUMT00000364500.1; NONHSAT098578; FPKM1_group_24241_transcript_1; ENST00000510536.5
Alternative gene names: ENSG00000251600; RP11-673E1.1; ENSG00000251600.1; OTTHUMG00000161311.2; ENSG00000251600.5; ENSG00000251600.6; AC139713.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.0393 non-coding 
CPAT coding probability 12.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMARCA5-4:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMARCA5-1:2
3.1 lnc-SMARCA5-2:2
4.0 lnc-SMARCA5-2:2
4.1 lnc-SMARCA5-2:2
5.0 lnc-SMARCA5-2:2
5.1 lnc-SMAD1-14:14
5.2 lnc-SMARCA5-4:13