Transcript: lnc-SMARCA5-4:9

Basic information

LNCipedia transcript ID: lnc-SMARCA5-4:9 
LNCipedia gene ID: lnc-SMARCA5-4
Ensembl Gene ID: ENSG00000251600
Ensembl Transcript ID: ENST00000641676
Location (hg38): chr4:143859026-143982607
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1368 bp
Exons: 6
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641676.1
Alternative gene names: ENSG00000251600.6; AC139713.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -19.2148 non-coding 
CPAT coding probability 6.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMARCA5-4:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SMAD1-14:10
5.1 lnc-SMAD1-14:10
5.2 lnc-SMARCA5-4:9