Transcript: lnc-SMARCC2-9:1

Basic information

LNCipedia transcript ID: lnc-SMARCC2-9:1 
LNCipedia gene ID: lnc-SMARCC2-9
Location (hg38): chr12:56146078-56152469
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6392 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257809.1|MICT00000080173.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.8554 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMARCC2-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMARCC2-2:5
5.0 lnc-SMARCC2-2:5
5.1 lnc-PMEL-15:1
5.2 lnc-SMARCC2-9:1