Transcript: lnc-SMARCE1-4:1

Basic information

LNCipedia transcript ID: lnc-SMARCE1-4:1 
LNCipedia gene ID: lnc-SMARCE1-4
Location (hg38): chr17:40607505-40608233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 729 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000033648.1|FTMT26600002039.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -238.7955 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMARCE1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMARCE1-4:1
5.0 lnc-SMARCE1-4:1
5.1 lnc-NR1D1-16:1
5.2 lnc-SMARCE1-4:1