Transcript: lnc-SMC2-140:1

Basic information

LNCipedia transcript ID: lnc-SMC2-140:1 
LNCipedia gene ID: lnc-SMC2-140
RefSeq ID: NR_135141
Location (hg38): chr9:104270229-104286578
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135141.1
Alternative gene names: LOC105376194


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -35.8067 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMC2-140:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PRPF4-140:1
5.1 lnc-PRPF4-140:1
5.2 lnc-SMC2-140:1