Transcript: lnc-SMC5-1:1

Basic information

LNCipedia transcript ID: lnc-SMC5-1:1 
LNCipedia gene ID: lnc-SMC5-1
Ensembl Gene ID: ENSG00000232086
Ensembl Transcript ID: ENST00000436491
Location (hg38): chr9:70708047-70712863
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 337 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436491.1; RP11-141J10.1-001; OTTHUMT00000052607.1; NONHSAT131820
Alternative gene names: ENSG00000232086.1; RP11-141J10.1; OTTHUMG00000019994.1; AL159990.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.2768 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMC5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMC5-1:1
4.0 lnc-SMC5-1:1
4.1 lnc-SMC5-1:1
5.0 lnc-SMC5-1:1
5.1 lnc-TMC1-17:1
5.2 lnc-SMC5-1:1