Transcript: lnc-SMC6-3:1

Basic information

LNCipedia transcript ID: lnc-SMC6-3:1 
LNCipedia gene ID: lnc-SMC6-3
Location (hg38): chr2:17868588-17879232
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4022 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000047791.1|ENCT00000239636.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.8808 non-coding 
CPAT coding probability 21.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMC6-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMC6-3:1
5.0 lnc-SMC6-3:1
5.1 lnc-RAD51AP2-3:2
5.2 lnc-SMC6-3:1