Transcript: lnc-SMDT1-1:1

Basic information

LNCipedia transcript ID: lnc-SMDT1-1:1 
LNCipedia gene ID: lnc-SMDT1-1
Ensembl Gene ID: ENSG00000281538
Ensembl Transcript ID: ENST00000626627
Location (hg38): chr22:42138060-42139726
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 631 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626627.1
Alternative gene names: ENSG00000281538.1; RP4-669P10.20; AC254562.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.4651 non-coding 
CPAT coding probability 5.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMDT1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SMDT1-1:1
5.1 lnc-SMDT1-1:1
5.2 lnc-SMDT1-1:1