Transcript: lnc-SMDT1-3:31

Basic information

LNCipedia transcript ID: lnc-SMDT1-3:31 
LNCipedia gene ID: lnc-SMDT1-3
Ensembl Gene ID: ENSG00000182057
Ensembl Transcript ID: ENST00000446578
Location (hg38): chr22:42269768-42275033
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 551 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446578; ENST00000446578.1; Z83851.3-003; OTTHUMT00000319664.1; NONHSAT087039
Alternative gene names: ENSG00000182057; Z83851.3; ENSG00000182057.4; OTTHUMG00000150700.1; OGFRP1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.4154 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMDT1-3:31 yes no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C22orf32-1:3
3.1 lnc-C22orf32-1:3
4.0 lnc-C22orf32-3:4
4.1 lnc-C22orf32-3:4
5.0 lnc-C22orf32-3:4
5.1 lnc-SMDT1-3:8
5.2 lnc-SMDT1-3:31