Transcript: lnc-SMDT1-3:44

Basic information

LNCipedia transcript ID: lnc-SMDT1-3:44 
LNCipedia gene ID: lnc-SMDT1-3
Location (hg38): chr22:42276355-42277051
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 544 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00029430; ENST00000420096; ENST00000420096.1; Z83851.4-001; OTTHUMT00000319657.1; NONHSAT087045
Alternative gene names: XLOC_014255; linc-SERHL2-3; ENSG00000233903; Z83851.4; ENSG00000233903.1; OTTHUMG00000150697.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.2769 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMDT1-3:44 yes no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C22orf32-1:5
3.1 lnc-C22orf32-1:5
4.0 lnc-C22orf32-3:9
4.1 lnc-C22orf32-3:9
5.0 lnc-C22orf32-3:9
5.1 lnc-SMDT1-3:21
5.2 lnc-SMDT1-3:44