Transcript: lnc-SMG1-5:1

Basic information

LNCipedia transcript ID: lnc-SMG1-5:1 
LNCipedia gene ID: lnc-SMG1-5
Location (hg38): chr16:19061483-19067830
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3070 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261465.2|HBMT00000557643.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 47.6917 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMG1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMG1-1:9
5.0 lnc-SMG1-1:9
5.1 lnc-MARF1-49:1
5.2 lnc-SMG1-5:1