Transcript: lnc-SMG1-5:10

Basic information

LNCipedia transcript ID: lnc-SMG1-5:10 
LNCipedia gene ID: lnc-SMG1-5
RefSeq ID: NR_119380
Location (hg38): chr16:19062754-19067691
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 518 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_119380; NR_119380.1
Alternative gene names: LOC102723385


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -436.9459 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMG1-5:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMG1-1:5
4.0 lnc-SMG1-1:5
4.1 lnc-SMG1-1:5
5.0 lnc-SMG1-1:5
5.1 lnc-MARF1-49:10
5.2 lnc-SMG1-5:10