Transcript: lnc-SMG1-5:11

Basic information

LNCipedia transcript ID: lnc-SMG1-5:11 
LNCipedia gene ID: lnc-SMG1-5
Ensembl Gene ID: ENSG00000261465
Ensembl Transcript ID: ENST00000568971
Location (hg38): chr16:19062862-19067641
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 360 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568971.1; RP11-626G11.5-001; OTTHUMT00000435810.2; NONHSAT140870; ENST00000568971.5
Alternative gene names: ENSG00000261465.2; RP11-626G11.5; OTTHUMG00000177197.2; ENSG00000261465.6; AC099518.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -436.9459 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMG1-5:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMG1-1:2
4.0 lnc-SMG1-1:2
4.1 lnc-SMG1-1:2
5.0 lnc-SMG1-1:2
5.1 lnc-MARF1-49:11
5.2 lnc-SMG1-5:11