Transcript: lnc-SMG1-5:3

Basic information

LNCipedia transcript ID: lnc-SMG1-5:3 
LNCipedia gene ID: lnc-SMG1-5
Location (hg38): chr16:19062779-19067830
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 367 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261465.2|FTMT26100015831.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -190.8325 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMG1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SMG1-1:11
5.0 lnc-SMG1-1:11
5.1 lnc-MARF1-49:3
5.2 lnc-SMG1-5:3