Transcript: lnc-SMG1-5:8

Basic information

LNCipedia transcript ID: lnc-SMG1-5:8 
LNCipedia gene ID: lnc-SMG1-5
RefSeq ID: NR_119379
Location (hg38): chr16:19062754-19067691
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 586 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_119379; NR_119379.1
Alternative gene names: LOC102723385


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.9835 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMG1-5:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMG1-1:7
4.0 lnc-SMG1-1:7
4.1 lnc-SMG1-1:7
5.0 lnc-SMG1-1:7
5.1 lnc-MARF1-49:8
5.2 lnc-SMG1-5:8