Transcript: lnc-SMG6-2:1

Basic information

LNCipedia transcript ID: lnc-SMG6-2:1 
LNCipedia gene ID: lnc-SMG6-2
Ensembl Gene ID: ENSG00000263050
Ensembl Transcript ID: ENST00000572790
Location (hg38): chr17:2043475-2044968
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 443 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572790.1; RP11-667K14.3-001; OTTHUMT00000438470.1; NONHSAT144898
Alternative gene names: ENSG00000263050.1; RP11-667K14.3; OTTHUMG00000177680.1; AC090617.6; AC090617.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -365.0459 non-coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMG6-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMG6-2:1
4.0 lnc-SMG6-2:1
4.1 lnc-SMG6-2:1
5.0 lnc-SMG6-2:1
5.1 lnc-RPH3AL-55:1
5.2 lnc-SMG6-2:1