Transcript: lnc-SMG6-3:1

Basic information

LNCipedia transcript ID: lnc-SMG6-3:1 
LNCipedia gene ID: lnc-SMG6-3
Ensembl Gene ID: ENSG00000262533
Ensembl Transcript ID: ENST00000572404
Location (hg38): chr17:2042900-2043425
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 422 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572404.1; RP11-667K14.4-001; OTTHUMT00000438469.1; NONHSAT144897
Alternative gene names: ENSG00000262533.1; RP11-667K14.4; OTTHUMG00000177679.1; AC090617.4; AC090617.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.0508 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMG6-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMG6-3:1
4.0 lnc-SMG6-3:1
4.1 lnc-SMG6-3:1
5.0 lnc-SMG6-3:1
5.1 lnc-RPH3AL-54:1
5.2 lnc-SMG6-3:1