Transcript: lnc-SMIM11B-180:1

Basic information

LNCipedia transcript ID: lnc-SMIM11B-180:1 
LNCipedia gene ID: lnc-SMIM11B-180
Ensembl Gene ID: ENSG00000276077
Ensembl Transcript ID: ENST00000617062
Location (hg38): chr21:7430659-7467182
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617062.4
Alternative gene names: ENSG00000276077.4; CH507-254M2.2; CU633904.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM11B-180:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-OLIG1-180:1
5.1 lnc-OLIG1-180:1
5.2 lnc-SMIM11B-180:1