Transcript: lnc-SMIM17-5:1

Basic information

LNCipedia transcript ID: lnc-SMIM17-5:1 
LNCipedia gene ID: lnc-SMIM17-5
Location (hg38): chr19:56671889-56686817
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3061 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000268352.1|MICT00000181831.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.5476 non-coding 
CPAT coding probability 5.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM17-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZNF71-5:2
5.0 lnc-ZNF71-5:2
5.1 lnc-ZNF583-15:1
5.2 lnc-SMIM17-5:1