Transcript: lnc-SMIM2-2:1

Basic information

LNCipedia transcript ID: lnc-SMIM2-2:1 
LNCipedia gene ID: lnc-SMIM2-2
Location (hg38): chr13:44231108-44301021
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 13940 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230731.2|MICT00000093782.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.8063 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C13orf44-2:4
5.0 lnc-C13orf44-2:4
5.1 lnc-CCDC169-96:1
5.2 lnc-SMIM2-2:1