Transcript: lnc-SMIM2-2:3

Basic information

LNCipedia transcript ID: lnc-SMIM2-2:3 
LNCipedia gene ID: lnc-SMIM2-2
Ensembl Gene ID: ENSG00000230731
Ensembl Transcript ID: ENST00000421190
Location (hg38): chr13:44234118-44243192
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3336 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT033492; ENST00000421190.2
Alternative gene names: ENSG00000230731.2; RP11-478K15.6; AL589745.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.0321 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C13orf44-2:2
4.0 lnc-C13orf44-2:2
4.1 lnc-C13orf44-2:2
5.0 lnc-C13orf44-2:2
5.1 lnc-CCDC169-96:3
5.2 lnc-SMIM2-2:3