Transcript: lnc-SMIM2-2:4

Basic information

LNCipedia transcript ID: lnc-SMIM2-2:4 
LNCipedia gene ID: lnc-SMIM2-2
Location (hg38): chr13:44231925-44236059
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 323 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021642; ENST00000421190; ENST00000421190.1; LINC00356-001; OTTHUMT00000044735.1; NONHSAT033491
Alternative gene names: XLOC_010586; linc-CCDC122-1; ENSG00000230731; RP11-478K15.5; ENSG00000230731.1; LINC00356; OTTHUMG00000016832.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -245.8044 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C13orf44-2:1
3.1 lnc-C13orf44-2:1
4.0 lnc-C13orf44-2:1
4.1 lnc-C13orf44-2:1
5.0 lnc-C13orf44-2:1
5.1 lnc-CCDC169-96:4
5.2 lnc-SMIM2-2:4