Transcript: lnc-SMIM21-1:2

Basic information

LNCipedia transcript ID: lnc-SMIM21-1:2 
LNCipedia gene ID: lnc-SMIM21-1
Ensembl Gene ID: ENSG00000266774
Ensembl Transcript ID: ENST00000579278
Location (hg38): chr18:75432703-75436957
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 748 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579278.1; RP11-321M21.1-001; OTTHUMT00000444920.1; NONHSAT059895
Alternative gene names: ENSG00000266774.1; RP11-321M21.1; OTTHUMG00000179127.1; AC116003.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.0479 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM21-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C18orf62-1:1
4.0 lnc-C18orf62-1:1
4.1 lnc-C18orf62-1:1
5.0 lnc-C18orf62-1:1
5.1 lnc-PQLC1-41:2
5.2 lnc-SMIM21-1:2